Basic Information
Gene Model:Bol002388
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000391
Sequence:
 | 
Gene Structure
Nucleotide Length:2400 bp
Transcript Length:1989 bp
Protein Length:662 aa
Strand:-
Location:Scaffold000391: 160636 : 163035
Gene CDSs(4): 1-1094 | 1170-1232 | 1315-1705 | 1960-2400 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 365 648 39.283IPR000719Protein kinase, catalytic domain
ProfileScanPS51257PROKAR_LIPOPROTEIN 1 22 6.000Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 371 393 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 488 500 NAIPR008271Serine/threonine-protein kinase, active site
Segsegseg 31 49 NANot foundNot found
Segsegseg 278 292 NANot foundNot found
Segsegseg 294 317 NANot foundNot found
Gene3DG3DSA:3.30.200.20no description 346 440 1.8e-20Not foundNot found
Gene3DG3DSA:1.10.510.10no description 443 656 9.4e-49Not foundNot found
superfamilySSF56112Protein kinase-like 335 653 3.8e-77IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 288 652 4.2e-151Not foundNot found
HMMPfamPF00069Pkinase 365 570 4.5e-44IPR017442Serine/threonine-protein kinase-like domain
HMMSmartSM00220no description 365 648 4.2e-37IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 365 645 1.2e-26IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LZM40.0WAKLQ_ARATH Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SV560.0B9SV56_RICCO Kinase, putative OS=Ricinus communis GN=RCOM_1158140 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G594202e-60K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2576(14 genes,8 taxa):Arabidopsis thalianaAT3G53840.1
ORTHOMCL2576(14 genes,8 taxa):Arabidopsis thalianaAT5G02070.1
ORTHOMCL2576(14 genes,8 taxa):Brassica oleraceaBol002388
ORTHOMCL2576(14 genes,8 taxa):Brassica oleraceaBol025155
ORTHOMCL2576(14 genes,8 taxa):Brassica rapaBra007030
ORTHOMCL2576(14 genes,8 taxa):Brassica rapaBra009616
ORTHOMCL2576(14 genes,8 taxa):Vitis viniferaGSVIVT01016473001
ORTHOMCL2576(14 genes,8 taxa):Vitis viniferaGSVIVT01034108001
ORTHOMCL2576(14 genes,8 taxa):Oryza sativaOs05t0318100-00
ORTHOMCL2576(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s09120.1
ORTHOMCL2576(14 genes,8 taxa):Populus trichocarpaPOPTR_0008s06030.1
ORTHOMCL2576(14 genes,8 taxa):Sorghum bicolorSb07g010240.1
ORTHOMCL2576(14 genes,8 taxa):Carica papayaevm.TU.supercontig_19.263
ORTHOMCL2576(14 genes,8 taxa):Carica papayaevm.TU.supercontig_33.143
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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