Basic Information
Gene Model:Bol002156
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000400
Sequence:
 | 
Gene Structure
Nucleotide Length:2512 bp
Transcript Length:1719 bp
Protein Length:572 aa
Strand:-
Location:Scaffold000400: 69540 : 72051
Gene CDSs(4): 1-892 | 983-1536 | 2158-2375 | 2458-2512 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 3 569 4.2e-20IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF00854PTR2 79 495 2.6e-48IPR000109Oligopeptide transporter
Segsegseg 226 239 NANot foundNot found
Segsegseg 251 257 NANot foundNot found
Segsegseg 264 277 NANot foundNot found
Segsegseg 367 379 NANot foundNot found
Segsegseg 415 422 NANot foundNot found
HMMPantherPTHR11654:SF37OLIGOPEPTIDE TRANSPO 2 570 5.7e-212Not foundNot found
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 2 570 5.7e-212Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
P460322e-77PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9SRI20.0Q9SRI2_ARATH Putative peptide transporter OS=Arabidopsis thaliana GN=At3g01350 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0098901e-84K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2062(15 genes,8 taxa):Arabidopsis thalianaAT3G01350.1
ORTHOMCL2062(15 genes,8 taxa):Arabidopsis thalianaAT5G14940.1
ORTHOMCL2062(15 genes,8 taxa):Brassica oleraceaBol002156
ORTHOMCL2062(15 genes,8 taxa):Brassica oleraceaBol021204
ORTHOMCL2062(15 genes,8 taxa):Brassica oleraceaBol030419
ORTHOMCL2062(15 genes,8 taxa):Brassica rapaBra008728
ORTHOMCL2062(15 genes,8 taxa):Brassica rapaBra023494
ORTHOMCL2062(15 genes,8 taxa):Brassica rapaBra039125
ORTHOMCL2062(15 genes,8 taxa):Vitis viniferaGSVIVT01032550001
ORTHOMCL2062(15 genes,8 taxa):Oryza sativaOs06t0239300-00
ORTHOMCL2062(15 genes,8 taxa):Oryza sativaOs06t0239500-01
ORTHOMCL2062(15 genes,8 taxa):Populus trichocarpaPOPTR_0004s06710.1
ORTHOMCL2062(15 genes,8 taxa):Populus trichocarpaPOPTR_0017s03380.1
ORTHOMCL2062(15 genes,8 taxa):Sorghum bicolorSb10g008670.1
ORTHOMCL2062(15 genes,8 taxa):Carica papayaevm.TU.supercontig_14.78
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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