Basic Information
Gene Model:Bol002093
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000404
Sequence:
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Gene Structure
Nucleotide Length:3045 bp
Transcript Length:2256 bp
Protein Length:751 aa
Strand:-
Location:Scaffold000404: 92644 : 95688
Gene CDSs(5): 1-801 | 1206-2315 | 2396-2503 | 2593-2778 | 2995-3045 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00504no description 283 346 5.2e-32IPR003613U box domain
HMMPfamPF04564U-box 281 353 7.2e-26IPR003613U box domain
HMMPantherPTHR22849WDSAM1 PROTEIN 275 361 1.6e-10Not foundNot found
superfamilySSF48371ARM repeat 320 686 1.1e-36IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 263 349 8.4e-12Not foundNot found
Segsegseg 404 415 NANot foundNot found
Segsegseg 594 605 NANot foundNot found
Gene3DG3DSA:3.30.40.10no description 276 353 2.7e-26Not foundNot found
Gene3DG3DSA:1.25.10.10no description 433 665 1.9e-19IPR011989Armadillo-like helical
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9C7G10.0PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RMH50.0B9RMH5_RICCO Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1080870 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178796e-07K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G24330.1
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G27910.1
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G67530.1
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol002093
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol005289
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol008441
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol010460
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol041756
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra010914
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra010960
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra030028
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra032852
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra033994
ORTHOMCL1103(19 genes,8 taxa):Vitis viniferaGSVIVT01010374001
ORTHOMCL1103(19 genes,8 taxa):Oryza sativaOs01t0901000-01
ORTHOMCL1103(19 genes,8 taxa):Populus trichocarpaPOPTR_0008s17710.1
ORTHOMCL1103(19 genes,8 taxa):Populus trichocarpaPOPTR_0010s06810.1
ORTHOMCL1103(19 genes,8 taxa):Sorghum bicolorSb03g042880.1
ORTHOMCL1103(19 genes,8 taxa):Carica papayaevm.TU.supercontig_43.21
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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