Basic Information
Gene Model:Bol002016
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000409
Sequence:
 | 
Gene Structure
Nucleotide Length:3227 bp
Transcript Length:1761 bp
Protein Length:586 aa
Strand:+
Location:Scaffold000409: 78825 : 82051
Gene CDSs(10): 1-526 | 857-940 | 1047-1343 | 1411-1556 | 1901-1990 | 2081-2186 | 2502-2592 | 2671-2818 | 2885-2992 | 3063-3227 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF56112Protein kinase-like 318 558 1.8e-47IPR011009Protein kinase-like domain
superfamilySSF54106LysM domain 125 174 7.2e-07Not foundNot found
HMMPfamPF01476LysM 129 172 3e-09IPR018392Peptidoglycan-binding lysin domain
HMMPfamPF07714Pkinase_Tyr 329 416 2.4e-17IPR001245Tyrosine-protein kinase, catalytic domain
HMMPfamPF00069Pkinase 417 474 4.1e-13IPR017442Serine/threonine-protein kinase-like domain
PatternScanPS00107PROTEIN_KINASE_ATP 335 356 NAIPR017441Protein kinase, ATP binding site
Segsegseg 223 243 NANot foundNot found
Segsegseg 553 566 NANot foundNot found
Gene3DG3DSA:3.30.200.20no description 310 400 6.3e-19Not foundNot found
Gene3DG3DSA:1.10.510.10no description 400 562 6.2e-23Not foundNot found
HMMSmartSM00257no description 128 172 3e-08IPR002482Peptidoglycan-binding Lysin subgroup
HMMSmartSM00220no description 329 563 1.2e-11IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 329 558 1.6e-13IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMPantherPTHR23258:SF421RECEPTOR PROTEIN KIN 98 562 1.9e-192Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 98 562 1.9e-192Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 329 563 15.284IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016998 Biological Process cell wall macromolecule catabolic process
Swiss-Prot
Best HitE_value Description
Q9FE201e-32PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FZA70.0Q9FZA7_ARATH Putative uncharacterized protein T14L22.13 OS=Arabidopsis thaliana GN=T14L22.13 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_11156201e-49K13429CERK1chitin elicitor receptor kinase 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5756(10 genes,8 taxa):Arabidopsis thalianaAT1G51940.1
ORTHOMCL5756(10 genes,8 taxa):Brassica oleraceaBol002016
ORTHOMCL5756(10 genes,8 taxa):Brassica oleraceaBol019497
ORTHOMCL5756(10 genes,8 taxa):Brassica rapaBra014302
ORTHOMCL5756(10 genes,8 taxa):Brassica rapaBra018937
ORTHOMCL5756(10 genes,8 taxa):Vitis viniferaGSVIVT01016975001
ORTHOMCL5756(10 genes,8 taxa):Oryza sativaOs01t0741200-01
ORTHOMCL5756(10 genes,8 taxa):Populus trichocarpaPOPTR_0001s19110.1
ORTHOMCL5756(10 genes,8 taxa):Sorghum bicolorSb03g034160.1
ORTHOMCL5756(10 genes,8 taxa):Carica papayaevm.TU.supercontig_25.20
Tandem Duplication
ClusterGene Num.Gene List
Cluster_14252Bol002016 Bol002017 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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