Basic Information
Gene Model:Bol001954
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000412
Sequence:
 | 
Gene Structure
Nucleotide Length:2348 bp
Transcript Length:1386 bp
Protein Length:461 aa
Strand:-
Location:Scaffold000412: 48740 : 51087
Gene CDSs(9): 1-113 | 287-476 | 564-781 | 868-959 | 1088-1293 | 1531-1623 | 1697-1753 | 1834-1962 | 2061-2348 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11782:SF8ADENOSINE DIPHOSPHAT 54 461 3.7e-274Not foundNot found
HMMPantherPTHR11782ADENOSINE/GUANOSINE 54 461 3.7e-274IPR000407Nucleoside phosphatase GDA1/CD39
PatternScanPS01238GDA1_CD39_NTPASE 179 194 NAIPR000407Nucleoside phosphatase GDA1/CD39
Segsegseg 23 40 NANot foundNot found
Segsegseg 285 296 NANot foundNot found
Segsegseg 335 345 NANot foundNot found
HMMPfamPF01150GDA1_CD39 51 461 1.5e-126IPR000407Nucleoside phosphatase GDA1/CD39
Gene Ontology
GO TermGO TypeDescription
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
P529141e-125NTPA_PEA Nucleoside-triphosphatase OS=Pisum sativum PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SQG20.0Q9SQG2_ARATH Apyrase OS=Arabidopsis thaliana GN=Atapy1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G040800.0K14641APY1_2apyrase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1534(17 genes,8 taxa):Arabidopsis thalianaAT3G04080.1
ORTHOMCL1534(17 genes,8 taxa):Arabidopsis thalianaAT5G18280.2
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol001208
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol001954
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol019729
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol034488
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra002150
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra006450
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra031947
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra040151
ORTHOMCL1534(17 genes,8 taxa):Vitis viniferaGSVIVT01038278001
ORTHOMCL1534(17 genes,8 taxa):Oryza sativaOs07t0682800-01
ORTHOMCL1534(17 genes,8 taxa):Populus trichocarpaPOPTR_0013s05040.1
ORTHOMCL1534(17 genes,8 taxa):Populus trichocarpaPOPTR_0019s04650.1
ORTHOMCL1534(17 genes,8 taxa):Sorghum bicolorSb01g036510.1
ORTHOMCL1534(17 genes,8 taxa):Sorghum bicolorSb02g043200.1
ORTHOMCL1534(17 genes,8 taxa):Carica papayaevm.TU.supercontig_676.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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