Basic Information
Gene Model:Bol001933
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000414
Sequence:
 | 
Gene Structure
Nucleotide Length:1930 bp
Transcript Length:1308 bp
Protein Length:435 aa
Strand:-
Location:Scaffold000414: 34230 : 36159
Gene CDSs(7): 1-244 | 316-551 | 823-939 | 1010-1181 | 1249-1402 | 1471-1642 | 1718-1930 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 268 284 NANot foundNot found
Segsegseg 323 336 NANot foundNot found
Segsegseg 368 376 NANot foundNot found
superfamilySSF81606Protein serine/threo 12 300 1.9e-47IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 47 295 2.6e-45IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF25PROTEIN PHOSPHATASE, 23 356 1.7e-193Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 23 356 1.7e-193IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 26 293 1e-55IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 52 295 0.00019IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 66 259 5.1e-31IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9M9C60.0P2C15_ARATH Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DH230.0B9DH23_ARATH AT1G68410 protein OS=Arabidopsis thaliana GN=AT1G68410 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G260804e-22K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL958(20 genes,8 taxa):Arabidopsis thalianaAT1G09160.2
ORTHOMCL958(20 genes,8 taxa):Arabidopsis thalianaAT1G68410.1
ORTHOMCL958(20 genes,8 taxa):Brassica oleraceaBol001933
ORTHOMCL958(20 genes,8 taxa):Brassica oleraceaBol022144
ORTHOMCL958(20 genes,8 taxa):Brassica rapaBra030759
ORTHOMCL958(20 genes,8 taxa):Brassica rapaBra033938
ORTHOMCL958(20 genes,8 taxa):Vitis viniferaGSVIVT01011853001
ORTHOMCL958(20 genes,8 taxa):Vitis viniferaGSVIVT01031195001
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs03t0301700-01
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs07t0690400-01
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs07t0690400-02
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0005s02110.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0008s12270.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0010s13130.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0013s01300.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb01g037810.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb02g043760.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb03g016300.1
ORTHOMCL958(20 genes,8 taxa):Carica papayaevm.TU.supercontig_37.21
ORTHOMCL958(20 genes,8 taxa):Carica papayaevm.TU.supercontig_65.54
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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