Basic Information
Gene Model:Bol001929
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000415
Sequence:
 | 
Gene Structure
Nucleotide Length:1652 bp
Transcript Length:888 bp
Protein Length:295 aa
Strand:-
Location:Scaffold000415: 194152 : 195803
Gene CDSs(5): 1-387 | 521-604 | 715-799 | 1239-1420 | 1503-1652 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00249Myb_DNA-binding 5 57 1.3e-07IPR014778Myb, DNA-binding
HMMPfamPF00538Linker_histone 113 176 1.2e-05IPR005818Histone H1/H5
ProfileScanPS51294HTH_MYB 1 58 11.281IPR017930Myb-type HTH DNA-binding domain
Segsegseg 230 275 NANot foundNot found
superfamilySSF46785"Winged helix" DNA-b 104 189 1.1e-16Not foundNot found
superfamilySSF46689Homeodomain-like 3 56 1.9e-07IPR009057Homeodomain-like
Coilcoilcoiled-coil 234 274 NANot foundNot found
HMMSmartSM00717no description 4 59 1.1e-05IPR001005SANT, DNA-binding
HMMSmartSM00526no description 106 171 5.3e-14IPR005818Histone H1/H5
Gene3DG3DSA:1.10.10.60no description 3 59 3.3e-14IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.10no description 103 187 3.3e-06IPR011991Winged helix repressor DNA-binding
HMMPantherPTHR21717:SF9TELOMERIC REPEAT BIN 5 61 5.5e-07Not foundNot found
HMMPantherPTHR21717TELOMERIC REPEAT BIN 5 61 5.5e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
P265695e-07H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LPL91e-103Q9LPL9_ARATH F2J10.16 protein OS=Arabidopsis thaliana GN=F2J10.16 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002617135e-75K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23290(2 genes,2 taxa):Brassica oleraceaBol001929
ORTHOMCL23290(2 genes,2 taxa):Brassica rapaBra039650
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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