Basic Information
Gene Model:Bol001837
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000420
Sequence:
 | 
Gene Structure
Nucleotide Length:1789 bp
Transcript Length:1545 bp
Protein Length:514 aa
Strand:+
Location:Scaffold000420: 104312 : 106100
Gene CDSs(2): 1-1112 | 1357-1789 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 207 508 9.6e-13IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR21576UNCHARACTERIZED NODU 1 512 5.6e-127Not foundNot found
Segsegseg 65 82 NANot foundNot found
Segsegseg 223 245 NANot foundNot found
Segsegseg 271 291 NANot foundNot found
Segsegseg 351 358 NANot foundNot found
Segsegseg 380 397 NANot foundNot found
Segsegseg 491 502 NANot foundNot found
HMMPfamPF06813Nodulin-like 7 252 7.7e-117IPR010658Nodulin-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O229260.0O22926_ARATH Putative uncharacterized protein At2g30300 OS=Arabidopsis thaliana GN=At2g30300 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1744(16 genes,8 taxa):Arabidopsis thalianaAT2G30300.1
ORTHOMCL1744(16 genes,8 taxa):Brassica oleraceaBol001837
ORTHOMCL1744(16 genes,8 taxa):Brassica oleraceaBol002619
ORTHOMCL1744(16 genes,8 taxa):Brassica rapaBra018321
ORTHOMCL1744(16 genes,8 taxa):Brassica rapaBra021625
ORTHOMCL1744(16 genes,8 taxa):Brassica rapaBra022788
ORTHOMCL1744(16 genes,8 taxa):Vitis viniferaGSVIVT01024607001
ORTHOMCL1744(16 genes,8 taxa):Oryza sativaOs01t0825500-01
ORTHOMCL1744(16 genes,8 taxa):Oryza sativaOs01t0825500-02
ORTHOMCL1744(16 genes,8 taxa):Oryza sativaOs05t0475700-01
ORTHOMCL1744(16 genes,8 taxa):Oryza sativaOs05t0475700-02
ORTHOMCL1744(16 genes,8 taxa):Populus trichocarpaPOPTR_0013s15010.1
ORTHOMCL1744(16 genes,8 taxa):Populus trichocarpaPOPTR_0019s14730.1
ORTHOMCL1744(16 genes,8 taxa):Sorghum bicolorSb03g038420.1
ORTHOMCL1744(16 genes,8 taxa):Sorghum bicolorSb09g023320.1
ORTHOMCL1744(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1629.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo