Basic Information
Gene Model:Bol001739
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000425
Sequence:
 | 
Gene Structure
Nucleotide Length:933 bp
Transcript Length:609 bp
Protein Length:202 aa
Strand:-
Location:Scaffold000425: 153240 : 154172
Gene CDSs(5): 1-264 | 345-388 | 461-518 | 599-692 | 785-933 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 90 122 8.982IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
Gene3DG3DSA:3.90.190.10no description 13 163 1.6e-52Not foundNot found
HMMPfamPF03162Y_phosphatase2 14 178 7.9e-67IPR004861Protein-tyrosine phosphatase, SIW14-like
Segsegseg 92 103 NANot foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 109 119 NAIPR016130Protein-tyrosine phosphatase, active site
superfamilySSF52799(Phosphotyrosine pro 17 161 2.8e-24Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZVN41e-53Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9M8S11e-101Q9M8S1_ARATH F13E7.26 protein OS=Arabidopsis thaliana GN=F13E7.26 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12816(6 genes,4 taxa):Arabidopsis thalianaAT3G02800.1
ORTHOMCL12816(6 genes,4 taxa):Brassica oleraceaBol001739
ORTHOMCL12816(6 genes,4 taxa):Brassica oleraceaBol002233
ORTHOMCL12816(6 genes,4 taxa):Brassica rapaBra001064
ORTHOMCL12816(6 genes,4 taxa):Brassica rapaBra021410
ORTHOMCL12816(6 genes,4 taxa):Populus trichocarpaPOPTR_0013s08430.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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