Basic Information
Gene Model:Bol001734
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000425
Sequence:
 | 
Gene Structure
Nucleotide Length:1934 bp
Transcript Length:1413 bp
Protein Length:470 aa
Strand:-
Location:Scaffold000425: 91525 : 93458
Gene CDSs(5): 1-432 | 509-732 | 805-922 | 995-1375 | 1677-1934 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 44 386 1.4e-63IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 42 383 4.6e-150Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 42 383 4.6e-150IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 96 341 3e-35IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 37 48 NANot foundNot found
Segsegseg 140 151 NANot foundNot found
Segsegseg 159 172 NANot foundNot found
Segsegseg 342 353 NANot foundNot found
Segsegseg 407 418 NANot foundNot found
HMMSmartSM00332no description 54 379 5.3e-68IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 62 385 9.5e-61IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9M8R70.0P2C33_ARATH Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RM680.0B9RM68_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1077980 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434305e-37K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6104(10 genes,5 taxa):Arabidopsis thalianaAT3G02750.3
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol000949
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol001734
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol002229
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra001060
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra021414
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra040598
ORTHOMCL6104(10 genes,5 taxa):Vitis viniferaGSVIVT01019076001
ORTHOMCL6104(10 genes,5 taxa):Populus trichocarpaPOPTR_0013s08330.1
ORTHOMCL6104(10 genes,5 taxa):Populus trichocarpaPOPTR_0019s08150.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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