Basic Information
Gene Model:Bol001670
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000428
Sequence:
 | 
Gene Structure
Nucleotide Length:13820 bp
Transcript Length:5652 bp
Protein Length:1883 aa
Strand:-
Location:Scaffold000428: 24411 : 38230
Gene CDSs(49): 1-420 | 512-562 | 678-797 | 888-990 | 1101-1259 | 1373-1461 | 1558-1671 | 1783-1941 | 2302-2349 | 2425-2601 | 2694-2746 | 2884-2996 | 3231-3314 | 3404-3519 | 3803-3922 | 4052-4160 | 4501-4666 | 4749-4817 | 4963-5097 | 5180-5289 | 5382-5542 | 5633-5723 | 5821-5918 | 6639-6759 | 6895-7055 | 7139-7220 | 7313-7410 | 7908-7935 | 8048-8133 | 8243-8329 | 8839-8920 | 9014-9082 | 9417-9469 | 9549-9735 | 9826-9949 | 10055-10157 | 10240-10332 | 10595-10673 | 10756-10832 | 11238-11366 | 11687-11804 | 11884-11981 | 12065-12154 | 12241-12366 | 12472-12582 | 12764-12875 | 12986-13152 | 13362-13459 | 13613-13820 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 571 580 NANot foundNot found
Segsegseg 1676 1686 NANot foundNot found
Segsegseg 1735 1746 NANot foundNot found
Segsegseg 1772 1781 NANot foundNot found
HMMPfamPF02364Glucan_synthase 1010 1757 3.5e-253IPR003440Glycosyl transferase, family 48
Gene Ontology
GO TermGO TypeDescription
GO:0000148 Cellular Component 1,3-beta-glucan synthase complex
GO:0003843 Molecular Function 1,3-beta-glucan synthase activity
GO:0006075 Biological Process 1,3-beta-glucan biosynthetic process
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SJM00.0CALSA_ARATH Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=4
TrEMBL
Best HitE_value Description
C8C9X20.0C8C9X2_ARATH Callose synthase 10 OS=Arabidopsis thaliana GN=CalS10 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G368500.0K11000CALScallose synthase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G05570.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G06490.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G13680.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G31960.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G36850.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G07160.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G59100.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G03550.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G04970.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G13000.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G36870.1
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol001670
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol002814
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol003544
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol004161
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol005100
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol006691
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol007650
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol008141
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol014106
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol019328
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol020665
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol023771
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032168
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032652
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol034005
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol040999
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol041063
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol043468
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra001239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra003364
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005620
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005624
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra008864
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015436
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015504
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra023386
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra027328
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029541
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029628
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra032416
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra034218
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra037213
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra040364
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01000622001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01001361001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01005204001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01007560001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020548001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020854001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025362001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025370001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025372001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01026489001
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533000-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-03
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-04
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0247050-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0182300-01
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04930.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04940.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s23710.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0002s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0003s21690.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.2
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s05210.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s09740.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0013s13490.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10080.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10090.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g048630.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g049270.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050470.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050480.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023490.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023520.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g030800.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g034880.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g008830.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g038510.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g005550.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g030970.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_189.9
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_2050.3
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_25.167
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_3407.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_452.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.97
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.98
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_714.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_858.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_973.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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