Basic Information
Gene Model:Bol001571
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000434
Sequence:
 | 
Gene Structure
Nucleotide Length:1544 bp
Transcript Length:1194 bp
Protein Length:397 aa
Strand:-
Location:Scaffold000434: 143816 : 145359
Gene CDSs(3): 1-213 | 300-512 | 777-1544 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03552Cellulose_synt 68 195 8.4e-51IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 257 350 8.6e-30IPR005150Cellulose synthase
Segsegseg 360 367 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q8VZK91e-176CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7Q9A11e-122A7Q9A1_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033394001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002485123e-64K10999CESAcellulose synthase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL303(34 genes,8 taxa):Arabidopsis thalianaAT1G55850.1
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol001571
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013320
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013321
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra030830
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra037098
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004272001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004458001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006760001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006761001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006763001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006764001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006766001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007038001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007039001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007042001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007043001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007333001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014703001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014705001
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-04
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-02
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-03
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0001s37770.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00610.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00620.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027570.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027610.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb04g029420.1
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_12.124
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.228
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.229
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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