Basic Information
Gene Model:Bol001465
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000442
Sequence:
 | 
Gene Structure
Nucleotide Length:3543 bp
Transcript Length:1776 bp
Protein Length:591 aa
Strand:+
Location:Scaffold000442: 101502 : 105044
Gene CDSs(11): 1-87 | 197-253 | 485-670 | 772-856 | 1101-1260 | 1347-1382 | 1546-1621 | 1716-1884 | 1961-2568 | 2656-2846 | 3423-3543 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 80 147 7.3e-16IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 175 229 1.7e-20IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.10no description 68 166 1.4e-22Not foundNot found
ProfileScanPS50962IAA_ARF 485 567 23.841IPR011525Aux/IAA-ARF-dimerisation
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q9ZTX90.0ARFD_ARATH Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7NZG61e-180A7NZG6_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024505001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002452512e-75K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13225(6 genes,6 taxa):Arabidopsis thalianaAT5G60450.1
ORTHOMCL13225(6 genes,6 taxa):Brassica oleraceaBol001465
ORTHOMCL13225(6 genes,6 taxa):Brassica rapaBra002479
ORTHOMCL13225(6 genes,6 taxa):Vitis viniferaGSVIVT01025159001
ORTHOMCL13225(6 genes,6 taxa):Populus trichocarpaPOPTR_0009s01700.1
ORTHOMCL13225(6 genes,6 taxa):Carica papayaevm.TU.supercontig_139.79
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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