Basic Information
Gene Model:Bol001447
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000443
Sequence:
 | 
Gene Structure
Nucleotide Length:2811 bp
Transcript Length:768 bp
Protein Length:255 aa
Strand:+
Location:Scaffold000443: 136305 : 139115
Gene CDSs(8): 1-91 | 194-304 | 1133-1225 | 1326-1475 | 1603-1661 | 1745-1797 | 2394-2544 | 2752-2811 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00156Pribosyltran 38 162 6.6e-43IPR000836Phosphoribosyltransferase
superfamilySSF53271PRTase-like 8 181 1e-54Not foundNot found
HMMTigrTIGR01090apt: adenine phospho 17 184 3.4e-76IPR005764Adenine phosphoribosyl transferase
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 129 161 0.00032Not foundNot found
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 129 161 0.00032Not foundNot found
Gene3DG3DSA:3.40.50.2020no description 8 190 7.9e-57Not foundNot found
HAMAPMF_00004APT_MF_00004 15 184 31.193IPR005764Adenine phosphoribosyl transferase
Segsegseg 151 163 NANot foundNot found
Segsegseg 209 222 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q425633e-98APT2_ARATH Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RV896e-83B9RV89_RICCO Adenine phosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_0901050 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G800505e-98K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23238(2 genes,2 taxa):Brassica oleraceaBol001447
ORTHOMCL23238(2 genes,2 taxa):Brassica rapaBra035200
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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