Basic Information
Gene Model:Bol001388
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000448
Sequence:
 | 
Gene Structure
Nucleotide Length:3557 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:-
Location:Scaffold000448: 21506 : 25062
Gene CDSs(7): 1-187 | 271-422 | 502-660 | 1409-1649 | 2103-2219 | 2919-2981 | 3355-3557 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 231 334 2.1e-10Not foundNot found
superfamilySSF103481Multidrug resistance 50 165 8.4e-10Not foundNot found
HMMPfamPF00892DUF6 25 158 1.2e-13IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 199 328 1.5e-09IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1632e-535NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q501F80.0Q501F8_ARATH At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2839(13 genes,7 taxa):Arabidopsis thalianaAT1G21890.1
ORTHOMCL2839(13 genes,7 taxa):Arabidopsis thalianaAT4G08300.1
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol001388
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol009693
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol042022
ORTHOMCL2839(13 genes,7 taxa):Brassica rapaBra010139
ORTHOMCL2839(13 genes,7 taxa):Brassica rapaBra012297
ORTHOMCL2839(13 genes,7 taxa):Vitis viniferaGSVIVT01008888001
ORTHOMCL2839(13 genes,7 taxa):Populus trichocarpaPOPTR_0002s08560.1
ORTHOMCL2839(13 genes,7 taxa):Populus trichocarpaPOPTR_0005s15810.1
ORTHOMCL2839(13 genes,7 taxa):Sorghum bicolorSb0012s002110.1
ORTHOMCL2839(13 genes,7 taxa):Carica papayaevm.TU.supercontig_36.45
ORTHOMCL2839(13 genes,7 taxa):Carica papayaevm.TU.supercontig_36.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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