Basic Information
Gene Model:Bol001354
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000452
Sequence:
 | 
Gene Structure
Nucleotide Length:1562 bp
Transcript Length:552 bp
Protein Length:183 aa
Strand:-
Location:Scaffold000452: 122951 : 124512
Gene CDSs(5): 1-175 | 887-957 | 1053-1130 | 1251-1327 | 1412-1562 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50110RESPONSE_REGULATORY 26 153 26.696IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 19 153 4.3e-23Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 25 157 8.4e-16Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 25 157 8.4e-16Not foundNot found
superfamilySSF52172CheY-like 22 170 4.6e-26IPR011006CheY-like
HMMPfamPF00072Response_reg 27 149 3.6e-21IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 25 152 1.7e-17IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SB044e-94ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q0WW395e-93Q0WW39_ARATH Response reactor 2 OS=Arabidopsis thaliana GN=At3g48100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G481006e-94K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9948(8 genes,6 taxa):Arabidopsis thalianaAT3G48100.1
ORTHOMCL9948(8 genes,6 taxa):Brassica oleraceaBol001354
ORTHOMCL9948(8 genes,6 taxa):Brassica rapaBra018084
ORTHOMCL9948(8 genes,6 taxa):Brassica rapaBra033773
ORTHOMCL9948(8 genes,6 taxa):Vitis viniferaGSVIVT01007835001
ORTHOMCL9948(8 genes,6 taxa):Populus trichocarpaPOPTR_0015s08130.1
ORTHOMCL9948(8 genes,6 taxa):Populus trichocarpaPOPTR_0015s08130.2
ORTHOMCL9948(8 genes,6 taxa):Carica papayaevm.TU.supercontig_35.23
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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