Basic Information
Gene Model:Bol001199
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000461
Sequence:
 | 
Gene Structure
Nucleotide Length:3130 bp
Transcript Length:1839 bp
Protein Length:612 aa
Strand:-
Location:Scaffold000461: 84751 : 87880
Gene CDSs(14): 1-145 | 230-305 | 411-523 | 658-766 | 872-1067 | 1232-1390 | 1465-1531 | 1613-1785 | 1912-2008 | 2119-2237 | 2317-2457 | 2530-2614 | 2691-2892 | 2974-3130 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPIRPIRSF006060Amino acid transport 37 547 2e-79IPR002293Amino acid/polyamine transporter I
HMMPantherPTHR11785:SF53CATIONIC AMINO ACID 35 604 2.7e-247IPR015606Cationic amino acid transporter
HMMPantherPTHR11785AMINO ACID TRANSPORT 35 604 2.7e-247IPR002293Amino acid/polyamine transporter I
Segsegseg 277 289 NANot foundNot found
Segsegseg 335 346 NANot foundNot found
HMMPfamPF00324AA_permease 48 420 5.3e-26IPR004841Amino acid permease-associated region
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0006865 Biological Process amino acid transport
GO:0015171 Molecular Function amino acid transmembrane transporter activity
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q091434e-98CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8W4K30.0Q8W4K3_ARATH Putative cationic amino acid transporter OS=Arabidopsis thaliana GN=At3g03720/ F20H23.25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tgu:1002234761e-100K13863
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL591(25 genes,8 taxa):Arabidopsis thalianaAT1G58030.1
ORTHOMCL591(25 genes,8 taxa):Arabidopsis thalianaAT3G03720.1
ORTHOMCL591(25 genes,8 taxa):Arabidopsis thalianaAT5G36940.1
ORTHOMCL591(25 genes,8 taxa):Brassica oleraceaBol001199
ORTHOMCL591(25 genes,8 taxa):Brassica oleraceaBol003831
ORTHOMCL591(25 genes,8 taxa):Brassica oleraceaBol021005
ORTHOMCL591(25 genes,8 taxa):Brassica oleraceaBol022686
ORTHOMCL591(25 genes,8 taxa):Brassica oleraceaBol040250
ORTHOMCL591(25 genes,8 taxa):Brassica rapaBra027707
ORTHOMCL591(25 genes,8 taxa):Brassica rapaBra027723
ORTHOMCL591(25 genes,8 taxa):Brassica rapaBra031977
ORTHOMCL591(25 genes,8 taxa):Brassica rapaBra036438
ORTHOMCL591(25 genes,8 taxa):Brassica rapaBra040788
ORTHOMCL591(25 genes,8 taxa):Vitis viniferaGSVIVT01029985001
ORTHOMCL591(25 genes,8 taxa):Vitis viniferaGSVIVT01029987001
ORTHOMCL591(25 genes,8 taxa):Oryza sativaOs03t0654400-01
ORTHOMCL591(25 genes,8 taxa):Oryza sativaOs10t0437100-01
ORTHOMCL591(25 genes,8 taxa):Oryza sativaOs12t0623500-01
ORTHOMCL591(25 genes,8 taxa):Populus trichocarpaPOPTR_0013s06110.1
ORTHOMCL591(25 genes,8 taxa):Populus trichocarpaPOPTR_0019s05610.1
ORTHOMCL591(25 genes,8 taxa):Populus trichocarpaPOPTR_0019s05620.1
ORTHOMCL591(25 genes,8 taxa):Sorghum bicolorSb01g013100.1
ORTHOMCL591(25 genes,8 taxa):Sorghum bicolorSb01g021240.1
ORTHOMCL591(25 genes,8 taxa):Carica papayaevm.TU.supercontig_161.28
ORTHOMCL591(25 genes,8 taxa):Carica papayaevm.TU.supercontig_161.30
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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