Basic Information
Gene Model:Bol001099
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000469
Sequence:
 | 
Gene Structure
Nucleotide Length:2130 bp
Transcript Length:2130 bp
Protein Length:709 aa
Strand:-
Location:Scaffold000469: 39061 : 41190
Gene CDSs(1): 1-2130 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 8 18 NANot foundNot found
Segsegseg 37 49 NANot foundNot found
Segsegseg 628 641 NANot foundNot found
Segsegseg 653 664 NANot foundNot found
Segsegseg 680 693 NANot foundNot found
Coilcoilcoiled-coil 213 234 NANot foundNot found
HMMPantherPTHR22849WDSAM1 PROTEIN 277 364 8.5e-11Not foundNot found
HMMSmartSM00504no description 286 349 2.8e-29IPR003613U box domain
HMMSmartSM00185no description 373 416 41IPR000225Armadillo
HMMSmartSM00185no description 418 458 0.44IPR000225Armadillo
HMMSmartSM00185no description 459 501 46IPR000225Armadillo
HMMSmartSM00185no description 503 543 6IPR000225Armadillo
HMMSmartSM00185no description 544 582 0.23IPR000225Armadillo
superfamilySSF48371ARM repeat 323 668 4.6e-48IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 264 349 3.4e-12Not foundNot found
Gene3DG3DSA:3.30.40.10no description 279 356 1.2e-25Not foundNot found
Gene3DG3DSA:1.25.10.10no description 387 675 2.7e-35IPR011989Armadillo-like helical
HMMPfamPF04564U-box 282 349 3.7e-24IPR003613U box domain
HMMPfamPF00514Arm 418 458 3.4e-08IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 429 471 8.697IPR000225Armadillo
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9C7R60.0PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9S8E70.0B9S8E7_RICCO Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1251990 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
bfu:BC1G_145277e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2341(14 genes,8 taxa):Arabidopsis thalianaAT1G29340.1
ORTHOMCL2341(14 genes,8 taxa):Brassica oleraceaBol001099
ORTHOMCL2341(14 genes,8 taxa):Brassica oleraceaBol008579
ORTHOMCL2341(14 genes,8 taxa):Brassica oleraceaBol037877
ORTHOMCL2341(14 genes,8 taxa):Brassica oleraceaBol041877
ORTHOMCL2341(14 genes,8 taxa):Brassica rapaBra010834
ORTHOMCL2341(14 genes,8 taxa):Brassica rapaBra021899
ORTHOMCL2341(14 genes,8 taxa):Brassica rapaBra032309
ORTHOMCL2341(14 genes,8 taxa):Vitis viniferaGSVIVT01021265001
ORTHOMCL2341(14 genes,8 taxa):Oryza sativaOs02t0234300-01
ORTHOMCL2341(14 genes,8 taxa):Populus trichocarpaPOPTR_0004s06040.1
ORTHOMCL2341(14 genes,8 taxa):Populus trichocarpaPOPTR_0011s06840.1
ORTHOMCL2341(14 genes,8 taxa):Sorghum bicolorSb04g008430.1
ORTHOMCL2341(14 genes,8 taxa):Carica papayaevm.TU.supercontig_124.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo