Basic Information
Gene Model:Bol001030
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000478
Sequence:
 | 
Gene Structure
Nucleotide Length:1212 bp
Transcript Length:717 bp
Protein Length:238 aa
Strand:+
Location:Scaffold000478: 61342 : 62553
Gene CDSs(5): 1-175 | 437-513 | 600-677 | 747-817 | 897-1212 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00448no description 33 157 7.3e-21IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 30 162 3.1e-27IPR011006CheY-like
HMMPfamPF00072Response_reg 35 157 1.3e-22IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 30 165 7e-16Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 30 165 7e-16Not foundNot found
Segsegseg 189 195 NANot foundNot found
Segsegseg 199 226 NANot foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 34 161 26.360IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 27 174 4e-24Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWS93e-91ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q29PQ83e-90Q29PQ8_ARATH At1g59940 OS=Arabidopsis thaliana GN=At1g59940 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G599404e-91K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9213(8 genes,5 taxa):Arabidopsis thalianaAT1G59940.1
ORTHOMCL9213(8 genes,5 taxa):Brassica oleraceaBol001030
ORTHOMCL9213(8 genes,5 taxa):Brassica rapaBra019932
ORTHOMCL9213(8 genes,5 taxa):Brassica rapaBra027829
ORTHOMCL9213(8 genes,5 taxa):Vitis viniferaGSVIVT01020146001
ORTHOMCL9213(8 genes,5 taxa):Populus trichocarpaPOPTR_0008s19730.1
ORTHOMCL9213(8 genes,5 taxa):Populus trichocarpaPOPTR_0010s04740.1
ORTHOMCL9213(8 genes,5 taxa):Populus trichocarpaPOPTR_0010s04740.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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