Basic Information
Gene Model:Bol000952
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000485
Sequence:
 | 
Gene Structure
Nucleotide Length:1063 bp
Transcript Length:600 bp
Protein Length:199 aa
Strand:-
Location:Scaffold000485: 48665 : 49727
Gene CDSs(5): 1-264 | 397-440 | 538-595 | 724-817 | 924-1063 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.90.190.10no description 10 160 6.8e-53Not foundNot found
HMMPfamPF03162Y_phosphatase2 11 175 2.3e-64IPR004861Protein-tyrosine phosphatase, SIW14-like
superfamilySSF52799(Phosphotyrosine pro 14 159 3.3e-23Not foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 87 119 8.651IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
PatternScanPS00383TYR_PHOSPHATASE_1 106 116 NAIPR016130Protein-tyrosine phosphatase, active site
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZVN42e-51Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9M8S17e-86Q9M8S1_ARATH F13E7.26 protein OS=Arabidopsis thaliana GN=F13E7.26 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23188(2 genes,2 taxa):Brassica oleraceaBol000952
ORTHOMCL23188(2 genes,2 taxa):Brassica rapaBra040601
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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