Basic Information
Gene Model:Bol000949
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000485
Sequence:
 | 
Gene Structure
Nucleotide Length:3354 bp
Transcript Length:1650 bp
Protein Length:549 aa
Strand:-
Location:Scaffold000485: 41110 : 44463
Gene CDSs(6): 1-420 | 490-713 | 793-910 | 986-1351 | 1426-1831 | 3239-3354 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 154 468 5e-61IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 286 424 4.4e-36IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 132 469 6e-64IPR001932Protein phosphatase 2C-related
Segsegseg 125 136 NANot foundNot found
Segsegseg 420 438 NANot foundNot found
HMMSmartSM00332no description 142 462 2.3e-67IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 130 491 7.1e-149Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 130 491 7.1e-149IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9M8R70.0P2C33_ARATH Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RM680.0B9RM68_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1077980 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434301e-34K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6104(10 genes,5 taxa):Arabidopsis thalianaAT3G02750.3
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol000949
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol001734
ORTHOMCL6104(10 genes,5 taxa):Brassica oleraceaBol002229
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra001060
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra021414
ORTHOMCL6104(10 genes,5 taxa):Brassica rapaBra040598
ORTHOMCL6104(10 genes,5 taxa):Vitis viniferaGSVIVT01019076001
ORTHOMCL6104(10 genes,5 taxa):Populus trichocarpaPOPTR_0013s08330.1
ORTHOMCL6104(10 genes,5 taxa):Populus trichocarpaPOPTR_0019s08150.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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