Basic Information
Gene Model:Bol000911
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000490
Sequence:
 | 
Gene Structure
Nucleotide Length:1500 bp
Transcript Length:1227 bp
Protein Length:408 aa
Strand:-
Location:Scaffold000490: 81054 : 82553
Gene CDSs(4): 1-255 | 337-573 | 646-1057 | 1178-1500 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 79 372 9.2e-55IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 38 369 1.6e-74IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 77 372 1.1e-55IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 35 402 4.2e-168Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 35 402 4.2e-168IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 81 343 2.2e-37IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 19 32 NANot foundNot found
Segsegseg 57 74 NANot foundNot found
PatternScanPS01032PP2C 81 89 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q5PNS90.0P2C64_ARATH Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PEM61e-162A9PEM6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_649192 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429704e-27K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT3G51370.1
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT4G38520.1
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT5G66080.1
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol000911
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol010509
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol010597
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol016073
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra010741
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra033566
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra036813
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra038895
ORTHOMCL556(26 genes,8 taxa):Vitis viniferaGSVIVT01023994001
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs03t0137200-01
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-01
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-02
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-03
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs10t0544900-01
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0004s18340.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0005s11030.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0007s09220.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0007s09220.2
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0009s13950.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb01g030180.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb01g047830.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb10g030320.1
ORTHOMCL556(26 genes,8 taxa):Carica papayaevm.TU.supercontig_20.108
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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