Basic Information
Gene Model:Bol000905
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000490
Sequence:
 | 
Gene Structure
Nucleotide Length:3592 bp
Transcript Length:1473 bp
Protein Length:490 aa
Strand:+
Location:Scaffold000490: 54836 : 58427
Gene CDSs(4): 1-615 | 1034-1084 | 1171-1690 | 3306-3592 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 94 102 NANot foundNot found
Segsegseg 439 458 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9SVF11e-144Q9SVF1_ARATH Putative uncharacterized protein AT4g38340 OS=Arabidopsis thaliana GN=F22I13.110 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19089(3 genes,3 taxa):Arabidopsis thalianaAT4G38340.1
ORTHOMCL19089(3 genes,3 taxa):Brassica oleraceaBol000905
ORTHOMCL19089(3 genes,3 taxa):Brassica rapaBra033561
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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