Basic Information
Gene Model:Bol000902
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000490
Sequence:
 | 
Gene Structure
Nucleotide Length:1329 bp
Transcript Length:1329 bp
Protein Length:442 aa
Strand:+
Location:Scaffold000490: 36413 : 37741
Gene CDSs(1): 1-1329 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 8 17 NANot foundNot found
Segsegseg 28 40 NANot foundNot found
Segsegseg 73 82 NANot foundNot found
Segsegseg 209 222 NANot foundNot found
Segsegseg 355 370 NANot foundNot found
HMMPantherPTHR22950AMINO ACID TRANSPORT 24 437 3.4e-102Not foundNot found
HMMPfamPF01490Aa_trans 37 435 2.4e-71IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q495N21e-38S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8LAI40.0Q8LAI4_ARATH Putative amino acid transport protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G382500.0K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL805(22 genes,8 taxa):Arabidopsis thalianaAT2G42005.1
ORTHOMCL805(22 genes,8 taxa):Arabidopsis thalianaAT4G38250.1
ORTHOMCL805(22 genes,8 taxa):Brassica oleraceaBol000902
ORTHOMCL805(22 genes,8 taxa):Brassica oleraceaBol015054
ORTHOMCL805(22 genes,8 taxa):Brassica rapaBra000591
ORTHOMCL805(22 genes,8 taxa):Brassica rapaBra033558
ORTHOMCL805(22 genes,8 taxa):Vitis viniferaGSVIVT01022294001
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-01
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-02
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-03
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-04
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-05
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-01
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-02
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-03
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s21660.1
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0005s10530.1
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s16910.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb04g032170.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb06g025470.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb06g025480.1
ORTHOMCL805(22 genes,8 taxa):Carica papayaevm.TU.supercontig_6.354
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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