Basic Information
Gene Model:Bol000879
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000492
Sequence:
 | 
Gene Structure
Nucleotide Length:1810 bp
Transcript Length:936 bp
Protein Length:311 aa
Strand:+
Location:Scaffold000492: 85676 : 87485
Gene CDSs(10): 1-6 | 108-206 | 302-385 | 459-491 | 585-782 | 868-916 | 1107-1210 | 1292-1369 | 1453-1578 | 1652-1810 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22952:SF6CAMP-RESPONSE ELEMEN 192 238 8.3e-06Not foundNot found
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 192 238 8.3e-06Not foundNot found
HMMSmartSM00338no description 193 257 3e-21IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF07777MFMR 1 142 3.8e-53IPR012900G-box binding, MFMR
HMMPfamPF00170bZIP_1 193 256 1.6e-24IPR011616bZIP transcription factor, bZIP-1
Coilcoilcoiled-coil 213 262 NANot foundNot found
PatternScanPS00036BZIP_BASIC 200 215 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 123 140 NANot foundNot found
Segsegseg 157 170 NANot foundNot found
ProfileScanPS50217BZIP 195 258 13.346IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006351 Biological Process transcription, DNA-dependent
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P427761e-145GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q393071e-175Q39307_BRANA Transcription factor OS=Brassica napus GN=BnGBF1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G462701e-144K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4760(11 genes,8 taxa):Arabidopsis thalianaAT2G46270.1
ORTHOMCL4760(11 genes,8 taxa):Brassica oleraceaBol000879
ORTHOMCL4760(11 genes,8 taxa):Brassica oleraceaBol017742
ORTHOMCL4760(11 genes,8 taxa):Brassica rapaBra004550
ORTHOMCL4760(11 genes,8 taxa):Vitis viniferaGSVIVT01027040001
ORTHOMCL4760(11 genes,8 taxa):Oryza sativaOs05t0569300-01
ORTHOMCL4760(11 genes,8 taxa):Populus trichocarpaPOPTR_0002s16870.1
ORTHOMCL4760(11 genes,8 taxa):Populus trichocarpaPOPTR_0014s08990.1
ORTHOMCL4760(11 genes,8 taxa):Populus trichocarpaPOPTR_0014s08990.2
ORTHOMCL4760(11 genes,8 taxa):Sorghum bicolorSb09g028990.1
ORTHOMCL4760(11 genes,8 taxa):Carica papayaevm.TU.supercontig_194.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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