Basic Information
Gene Model:Bol000769
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000502
Sequence:
 | 
Gene Structure
Nucleotide Length:2719 bp
Transcript Length:2028 bp
Protein Length:675 aa
Strand:-
Location:Scaffold000502: 43693 : 46411
Gene CDSs(8): 1-120 | 224-815 | 891-1326 | 1428-1602 | 1693-1857 | 1949-2082 | 2191-2352 | 2476-2719 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 57 176 2.8e-15Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 57 176 2.8e-15Not foundNot found
HMMSmartSM00448no description 56 171 3.5e-25IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 57 197 6.4e-27Not foundNot found
HMMPfamPF00072Response_reg 58 172 1.8e-21IPR001789Signal transduction response regulator, receiver region
HMMPfamPF06203CCT 617 661 1.2e-21IPR010402CCT domain
Segsegseg 180 189 NANot foundNot found
Segsegseg 224 237 NANot foundNot found
Segsegseg 551 607 NANot foundNot found
superfamilySSF52172CheY-like 53 182 2.6e-31IPR011006CheY-like
ProfileScanPS50110RESPONSE_REGULATORY 57 175 27.936IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51017CCT 617 659 15.656IPR010402CCT domain
PatternScanPS00237G_PROTEIN_RECEP_F1_1 37 53 NAIPR0002767TM GPCR, rhodopsin-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0007186 Biological Process G-protein coupled receptor protein signaling pathway
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q93WK50.0APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SGT01e-162B9SGT0_RICCO Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_0819890 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G028100.0K12129APRR7pseudo-response regulator 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4077(12 genes,8 taxa):Arabidopsis thalianaAT5G02810.1
ORTHOMCL4077(12 genes,8 taxa):Brassica oleraceaBol000769
ORTHOMCL4077(12 genes,8 taxa):Brassica oleraceaBol010087
ORTHOMCL4077(12 genes,8 taxa):Brassica rapaBra009565
ORTHOMCL4077(12 genes,8 taxa):Brassica rapaBra028861
ORTHOMCL4077(12 genes,8 taxa):Vitis viniferaGSVIVT01032644001
ORTHOMCL4077(12 genes,8 taxa):Oryza sativaOs03t0284100-01
ORTHOMCL4077(12 genes,8 taxa):Oryza sativaOs07t0695100-01
ORTHOMCL4077(12 genes,8 taxa):Populus trichocarpaPOPTR_0008s04610.1
ORTHOMCL4077(12 genes,8 taxa):Populus trichocarpaPOPTR_0010s22230.1
ORTHOMCL4077(12 genes,8 taxa):Sorghum bicolorSb01g038820.1
ORTHOMCL4077(12 genes,8 taxa):Carica papayaevm.TU.supercontig_1.279
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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