Basic Information
Gene Model:Bol000764
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000502
Sequence:
 | 
Gene Structure
Nucleotide Length:1335 bp
Transcript Length:1089 bp
Protein Length:362 aa
Strand:+
Location:Scaffold000502: 30681 : 32015
Gene CDSs(4): 1-271 | 354-718 | 811-1047 | 1120-1335 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 20 343 1.2e-150Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 20 343 1.2e-150IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 17 336 4.4e-73IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 35 342 3.4e-59IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 65 310 5.8e-38IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 294 310 NANot foundNot found
superfamilySSF81606Protein serine/threo 7 340 3.2e-61IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 65 73 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q501F91e-178P2C67_ARATH Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PSU51e-141A7PSU5_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023088001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429701e-27K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11919(7 genes,3 taxa):Arabidopsis thalianaAT5G02760.1
ORTHOMCL11919(7 genes,3 taxa):Brassica oleraceaBol000764
ORTHOMCL11919(7 genes,3 taxa):Brassica oleraceaBol010091
ORTHOMCL11919(7 genes,3 taxa):Brassica oleraceaBol015292
ORTHOMCL11919(7 genes,3 taxa):Brassica rapaBra005755
ORTHOMCL11919(7 genes,3 taxa):Brassica rapaBra009569
ORTHOMCL11919(7 genes,3 taxa):Brassica rapaBra028865
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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