Basic Information
Gene Model:Bol000708
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000506
Sequence:
 | 
Gene Structure
Nucleotide Length:1794 bp
Transcript Length:1794 bp
Protein Length:597 aa
Strand:+
Location:Scaffold000506: 25204 : 26997
Gene CDSs(1): 1-1794 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00219no description 303 572 4e-10IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 309 573 6.6e-08IPR002290Serine/threonine-protein kinase domain
HMMPantherPTHR23258:SF477RECEPTOR-LIKE PROTEI 53 476 1.3e-259Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 53 476 1.3e-259Not foundNot found
HMMPfamPF08263LRRNT_2 18 61 1.4e-11IPR013210Leucine-rich repeat, N-terminal
HMMPfamPF00560LRR_1 91 113 0.0083IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 116 138 0.02IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 140 162 1.8IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 164 186 0.0063IPR001611Leucine-rich repeat
HMMPfamPF00069Pkinase 428 502 1.6e-07IPR017442Serine/threonine-protein kinase-like domain
Segsegseg 4 16 NANot foundNot found
Segsegseg 159 170 NANot foundNot found
Segsegseg 217 234 NANot foundNot found
Segsegseg 243 258 NANot foundNot found
Gene3DG3DSA:3.80.10.10no description 15 206 2.3e-34Not foundNot found
Gene3DG3DSA:3.30.200.20no description 278 371 4.6e-11Not foundNot found
Gene3DG3DSA:1.10.510.10no description 374 583 1.4e-35Not foundNot found
superfamilySSF56112Protein kinase-like 267 572 2.9e-57IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 15 206 1.3e-36Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 297 582 24.895IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O045670.0Y1719_ARATH Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0LGE90.0C0LGE9_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G394002e-80K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT1G27190.1
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT1G69990.1
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT3G28450.1
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol000708
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol031220
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol032964
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol042964
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra016244
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra024650
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra025334
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra033046
ORTHOMCL1259(18 genes,7 taxa):Oryza sativaOs04t0487200-01
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0001s34850.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0004s07980.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0017s02110.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0017s11080.1
ORTHOMCL1259(18 genes,7 taxa):Sorghum bicolorSb06g020750.1
ORTHOMCL1259(18 genes,7 taxa):Carica papayaevm.TU.supercontig_5.307
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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