Basic Information
Gene Model:Bol000684
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000509
Sequence:
 | 
Gene Structure
Nucleotide Length:2076 bp
Transcript Length:2076 bp
Protein Length:691 aa
Strand:+
Location:Scaffold000509: 43791 : 45866
Gene CDSs(1): 1-2076 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 23 31 NANot foundNot found
Segsegseg 84 96 NANot foundNot found
Segsegseg 382 390 NANot foundNot found
Segsegseg 666 689 NANot foundNot found
Gene3DG3DSA:2.60.120.200no description 28 278 9.7e-61IPR013320Concanavalin A-like lectin/glucanase, subgroup
Gene3DG3DSA:3.30.200.20no description 345 443 6e-20Not foundNot found
Gene3DG3DSA:1.10.510.10no description 443 662 7.7e-50Not foundNot found
HMMSmartSM00220no description 364 634 3e-38IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 364 634 3.7e-31IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMPfamPF00139Lectin_legB 29 272 4.6e-95IPR001220Legume lectin, beta chain
HMMPfamPF00069Pkinase 364 569 3.1e-51IPR017442Serine/threonine-protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 364 643 40.174IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258:SF267RECEPTOR LIKE PROTEI 289 671 6.4e-288Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 289 671 6.4e-288Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 370 397 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 491 503 NAIPR008271Serine/threonine-protein kinase, active site
superfamilySSF56112Protein kinase-like 334 634 2.1e-77IPR011009Protein kinase-like domain
superfamilySSF49899Concanavalin A-like 28 276 1.7e-66IPR008985Concanavalin A-like lectin/glucanase
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9M0200.0LRKA2_ARATH Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SR870.0Q9SR87_ARATH Putative serine/threonine protein kinase OS=Arabidopsis thaliana GN=At3g08870 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04781508e-54K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL734(23 genes,7 taxa):Arabidopsis thalianaAT3G08870.1
ORTHOMCL734(23 genes,7 taxa):Arabidopsis thalianaAT5G01540.1
ORTHOMCL734(23 genes,7 taxa):Arabidopsis thalianaAT5G01550.1
ORTHOMCL734(23 genes,7 taxa):Arabidopsis thalianaAT5G01560.1
ORTHOMCL734(23 genes,7 taxa):Brassica oleraceaBol000684
ORTHOMCL734(23 genes,7 taxa):Brassica oleraceaBol005681
ORTHOMCL734(23 genes,7 taxa):Brassica oleraceaBol012795
ORTHOMCL734(23 genes,7 taxa):Brassica oleraceaBol023051
ORTHOMCL734(23 genes,7 taxa):Brassica oleraceaBol026074
ORTHOMCL734(23 genes,7 taxa):Brassica rapaBra005680
ORTHOMCL734(23 genes,7 taxa):Brassica rapaBra005681
ORTHOMCL734(23 genes,7 taxa):Brassica rapaBra006862
ORTHOMCL734(23 genes,7 taxa):Brassica rapaBra028907
ORTHOMCL734(23 genes,7 taxa):Brassica rapaBra040061
ORTHOMCL734(23 genes,7 taxa):Oryza sativaOs06t0210400-01
ORTHOMCL734(23 genes,7 taxa):Oryza sativaOs10t0533800-00
ORTHOMCL734(23 genes,7 taxa):Populus trichocarpaPOPTR_0006s10410.1
ORTHOMCL734(23 genes,7 taxa):Populus trichocarpaPOPTR_0016s13130.1
ORTHOMCL734(23 genes,7 taxa):Populus trichocarpaPOPTR_0016s13150.1
ORTHOMCL734(23 genes,7 taxa):Populus trichocarpaPOPTR_0437s00200.1
ORTHOMCL734(23 genes,7 taxa):Sorghum bicolorSb01g030670.1
ORTHOMCL734(23 genes,7 taxa):Sorghum bicolorSb03g031870.1
ORTHOMCL734(23 genes,7 taxa):Carica papayaevm.TU.supercontig_120.36
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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