Basic Information
Gene Model:Bol000680
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000509
Sequence:
 | 
Gene Structure
Nucleotide Length:1551 bp
Transcript Length:1158 bp
Protein Length:385 aa
Strand:+
Location:Scaffold000509: 26242 : 27792
Gene CDSs(5): 1-276 | 348-632 | 722-839 | 978-1201 | 1297-1551 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 39 55 NANot foundNot found
Segsegseg 57 71 NANot foundNot found
Segsegseg 130 143 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 81 359 1.9e-57IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 25 353 3.6e-58IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 177 332 1e-30IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 93 383 4e-114Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 93 383 4e-114IPR015655Protein phosphatase 2C
superfamilySSF81606Protein serine/threo 81 360 2e-55IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q6NKS11e-150P2C65_ARATH Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana GN=At5g01700 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IGK35e-90B9IGK3_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_254154 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434308e-30K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo