Basic Information
Gene Model:Bol000638
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:Cun
Scaffold:Scaffold000514
Sequence:
 | 
Gene Structure
Nucleotide Length:1017 bp
Transcript Length:399 bp
Protein Length:132 aa
Strand:+
Location:Scaffold000514: 26719 : 27735
Gene CDSs(5): 1-98 | 176-255 | 348-418 | 617-670 | 922-1017 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50206RHODANESE_3 23 125 17.022IPR001763Rhodanese-like
HMMPantherPTHR13253FAMILY NOT NAMED 30 124 9.3e-07Not foundNot found
HMMSmartSM00450no description 14 122 9.8e-14IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 30 119 9.4e-11IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 5 125 2.1e-22IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 11 123 5.1e-24IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q391298e-26STR16_ARATH Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9FKW82e-56Q9FKW8_ARATH Senescence-associated protein sen1-like protein OS=Arabidopsis thaliana GN=At5g66170 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pgu:PGUG_044177e-07K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT2G17850.1
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT5G66170.2
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol000638
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol012458
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol027147
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra012056
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra031805
ORTHOMCL2955(13 genes,8 taxa):Vitis viniferaGSVIVT01018758001
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-01
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-02
ORTHOMCL2955(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s11330.1
ORTHOMCL2955(13 genes,8 taxa):Sorghum bicolorSb04g000410.1
ORTHOMCL2955(13 genes,8 taxa):Carica papayaevm.TU.supercontig_6.266
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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