Basic Information
Gene Model:Bol000633
Gene Family:Kinesins gene family
Chromosome:Cun
Scaffold:Scaffold000514
Sequence:
 | 
Gene Structure
Nucleotide Length:8037 bp
Transcript Length:4164 bp
Protein Length:1387 aa
Strand:-
Location:Scaffold000514: 5094 : 13130
Gene CDSs(24): 1-227 | 298-361 | 1565-1677 | 1955-2118 | 2213-2484 | 2820-3017 | 3095-3190 | 3263-3433 | 3531-3733 | 3828-3954 | 4087-4278 | 4361-4501 | 4619-4714 | 4791-4955 | 5223-5426 | 5526-5672 | 5769-5921 | 6021-6123 | 6233-6348 | 6437-6618 | 6705-6804 | 6967-7524 | 7592-7805 | 7880-8037 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00139no description 122 278 1.1e-43IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
HMMSmartSM00295no description 279 503 1.2e-35IPR019749Band 4.1 domain
HMMSmartSM00129no description 888 1215 3.4e-160IPR001752Kinesin, motor region
BlastProDomPD936484Q806D4_9VIRU_Q806D4; 627 811 0.002Not foundNot found
ProfileScanPS50057FERM_3 283 597 34.635IPR000299FERM domain
ProfileScanPS50067KINESIN_MOTOR_DOMAIN 887 1138 48.808IPR001752Kinesin, motor region
ProfileScanPS51016MYTH4 122 278 49.702IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
HMMPantherPTHR16012:SF172CALMODULIN BINDING P 891 1261 5.5e-274Not foundNot found
HMMPantherPTHR16012KINESIN HEAVY CHAIN 891 1261 5.5e-274Not foundNot found
Coilcoilcoiled-coil 622 657 NANot foundNot found
Coilcoilcoiled-coil 685 713 NANot foundNot found
Coilcoilcoiled-coil 783 856 NANot foundNot found
PatternScanPS00411KINESIN_MOTOR_DOMAIN 1107 1118 NAIPR019821Kinesin, motor region, conserved site
Gene3DG3DSA:1.20.80.10no description 381 497 2.2e-20IPR014352FERM/acyl-CoA-binding protein, 3-helical bundle
Gene3DG3DSA:3.40.850.10no description 885 1249 4.4e-115IPR001752Kinesin, motor region
HMMPfamPF00784MyTH4 164 278 4.2e-54IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
HMMPfamPF09379FERM_N 287 386 2.3e-16IPR018979FERM, N-terminal
HMMPfamPF00373FERM_M 388 504 3.2e-17IPR019748FERM central domain
HMMPfamPF00225Kinesin 896 1208 5.6e-148IPR001752Kinesin, motor region
Segsegseg 6 17 NANot foundNot found
Segsegseg 24 30 NANot foundNot found
Segsegseg 44 73 NANot foundNot found
Segsegseg 90 107 NANot foundNot found
Segsegseg 512 524 NANot foundNot found
Segsegseg 825 843 NANot foundNot found
Segsegseg 1239 1248 NANot foundNot found
superfamilySSF52540P-loop containing nu 890 1249 2.5e-113Not foundNot found
superfamilySSF47031Second domain of FER 381 498 5.6e-21IPR019748FERM central domain
superfamilySSF56821Prismane protein-lik 833 894 9e-09IPR011254Prismane-like
superfamilySSF50729PH domain-like 501 593 3.1e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003777 Molecular Function microtubule motor activity
GO:0003824 Molecular Function catalytic activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0005856 Cellular Component cytoskeleton
GO:0007018 Biological Process microtubule-based movement
Swiss-Prot
Best HitE_value Description
P468644e-76ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FHN80.0Q9FHN8_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=At5g65930 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tgo:TGME49_0854101e-115K10406KIFC2_3kinesin family member C2/C3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3374(13 genes,8 taxa):Arabidopsis thalianaAT5G65930.2
ORTHOMCL3374(13 genes,8 taxa):Brassica oleraceaBol000633
ORTHOMCL3374(13 genes,8 taxa):Brassica oleraceaBol019312
ORTHOMCL3374(13 genes,8 taxa):Brassica rapaBra031801
ORTHOMCL3374(13 genes,8 taxa):Brassica rapaBra037195
ORTHOMCL3374(13 genes,8 taxa):Vitis viniferaGSVIVT01026414001
ORTHOMCL3374(13 genes,8 taxa):Oryza sativaOs04t0666900-01
ORTHOMCL3374(13 genes,8 taxa):Oryza sativaOs04t0666900-02
ORTHOMCL3374(13 genes,8 taxa):Populus trichocarpaPOPTR_0001s45950.1
ORTHOMCL3374(13 genes,8 taxa):Populus trichocarpaPOPTR_0011s14970.1
ORTHOMCL3374(13 genes,8 taxa):Sorghum bicolorSb06g032060.1
ORTHOMCL3374(13 genes,8 taxa):Sorghum bicolorSb08g015477.1
ORTHOMCL3374(13 genes,8 taxa):Carica papayaevm.TU.supercontig_17.14
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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