Basic Information
Gene Model:Bol000589
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000521
Sequence:
 | 
Gene Structure
Nucleotide Length:2402 bp
Transcript Length:2040 bp
Protein Length:679 aa
Strand:-
Location:Scaffold000521: 29569 : 31970
Gene CDSs(4): 1-116 | 219-483 | 662-775 | 858-2402 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 238 672 1.9e-50IPR001932Protein phosphatase 2C-related
Segsegseg 83 103 NANot foundNot found
Segsegseg 160 193 NANot foundNot found
Segsegseg 247 259 NANot foundNot found
Segsegseg 512 523 NANot foundNot found
HMMSmartSM00332no description 256 668 1.7e-68IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 274 674 5.4e-44IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 438 610 3.4e-22IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 266 674 2.9e-149Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 266 674 2.9e-149IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LZ860.0P2C66_ARATH Probable protein phosphatase 2C 66 OS=Arabidopsis thaliana GN=PLL2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9T2620.0B9T262_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0916240 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5840184e-20K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT1G07630.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT2G28890.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT3G09400.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT5G02400.1
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol000589
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol008347
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol011309
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol023399
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol033926
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol041143
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra001308
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra009593
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra029766
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra030695
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra041012
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01024976001
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01034176001
ORTHOMCL626(24 genes,8 taxa):Oryza sativaOs03t0821300-01
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.2
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0006s08520.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0009s03590.1
ORTHOMCL626(24 genes,8 taxa):Sorghum bicolorSb01g003190.1
ORTHOMCL626(24 genes,8 taxa):Carica papayaevm.TU.supercontig_81.160
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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