Basic Information
Gene Model:Bol000542
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000533
Sequence:
 | 
Gene Structure
Nucleotide Length:943 bp
Transcript Length:627 bp
Protein Length:208 aa
Strand:-
Location:Scaffold000533: 36124 : 37066
Gene CDSs(3): 1-83 | 150-561 | 812-943 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 29 122 12.238IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 20 124 2.6e-25Not foundNot found
HMMPfamPF02362B3 29 124 1.6e-21IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q84R279e-73Y3896_ARATH B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5AN665e-20A5AN66_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027619 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15592(4 genes,3 taxa):Arabidopsis thalianaAT3G18960.1
ORTHOMCL15592(4 genes,3 taxa):Arabidopsis thalianaAT4G01580.1
ORTHOMCL15592(4 genes,3 taxa):Brassica oleraceaBol000542
ORTHOMCL15592(4 genes,3 taxa):Brassica rapaBra022374
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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