Basic Information
Gene Model:Bol000471
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000550
Sequence:
 | 
Gene Structure
Nucleotide Length:1671 bp
Transcript Length:1671 bp
Protein Length:556 aa
Strand:-
Location:Scaffold000550: 20475 : 22145
Gene CDSs(1): 1-1671 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 1 546 1.3e-29IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR21576UNCHARACTERIZED NODU 21 555 1.5e-172Not foundNot found
HMMPfamPF06813Nodulin-like 27 278 6.1e-138IPR010658Nodulin-like
Segsegseg 268 279 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6CGU81e-06MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9SS920.0Q9SS92_ARATH F4P13.17 protein OS=Arabidopsis thaliana GN=At3g01630 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT1G31470.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT3G01630.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT4G19450.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT5G45275.1
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000471
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000969
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol003705
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol005622
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol011675
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol022863
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol029867
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra012543
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra013398
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra020961
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra021958
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra023189
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra025086
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra039106
ORTHOMCL485(27 genes,8 taxa):Vitis viniferaGSVIVT01036919001
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs11t0107400-01
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs12t0106500-00
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0001s01040.1
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0003s10470.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb05g000610.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb08g000640.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_3403.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_73.58
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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