Basic Information
Gene Model:Bol000450
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000558
Sequence:
 | 
Gene Structure
Nucleotide Length:552 bp
Transcript Length:552 bp
Protein Length:183 aa
Strand:+
Location:Scaffold000558: 22438 : 22989
Gene CDSs(1): 1-552 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 33 59 NANot foundNot found
HMMPfamPF02519Auxin_inducible 75 137 9.2e-33IPR003676Auxin responsive SAUR protein
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P330817e-11AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G313206e-80K14488SAURSAUR family protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8266(9 genes,7 taxa):Arabidopsis thalianaAT4G31320.1
ORTHOMCL8266(9 genes,7 taxa):Brassica oleraceaBol000450
ORTHOMCL8266(9 genes,7 taxa):Brassica oleraceaBol018011
ORTHOMCL8266(9 genes,7 taxa):Brassica rapaBra011258
ORTHOMCL8266(9 genes,7 taxa):Vitis viniferaGSVIVT01029558001
ORTHOMCL8266(9 genes,7 taxa):Vitis viniferaGSVIVT01029567001
ORTHOMCL8266(9 genes,7 taxa):Oryza sativaOs04t0608300-01
ORTHOMCL8266(9 genes,7 taxa):Populus trichocarpaPOPTR_0010s26030.1
ORTHOMCL8266(9 genes,7 taxa):Sorghum bicolorSb06g027920.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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