Basic Information
Gene Model:Bol000417
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000576
Sequence:
 | 
Gene Structure
Nucleotide Length:1595 bp
Transcript Length:954 bp
Protein Length:317 aa
Strand:-
Location:Scaffold000576: 26254 : 27848
Gene CDSs(8): 1-108 | 193-273 | 355-420 | 497-574 | 643-714 | 882-971 | 1046-1322 | 1414-1595 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00503no description 64 179 1.8e-22IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 216 283 5.4e-12IPR000727Target SNARE coiled-coil region
HMMPantherPTHR19957:SF5SYNTAXIN 16 3 251 8.5e-114Not foundNot found
HMMPantherPTHR19957SYNTAXIN 3 251 8.5e-114Not foundNot found
ProfileScanPS50192T_SNARE 221 283 16.500IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare proteins 67 276 3.6e-37IPR010989t-SNARE
HMMPfamPF00804Syntaxin 69 165 1.1e-21IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 226 288 5.5e-21IPR000727Target SNARE coiled-coil region
PatternScanPS00914SYNTAXIN 227 266 NAIPR006012Syntaxin/epimorphin, conserved site
Gene3DG3DSA:1.20.1050.30no description 67 276 3e-39Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SUJ11e-165SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G057101e-163K08489STX16syntaxin 16
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4813(11 genes,8 taxa):Arabidopsis thalianaAT3G05710.2
ORTHOMCL4813(11 genes,8 taxa):Brassica oleraceaBol000417
ORTHOMCL4813(11 genes,8 taxa):Brassica oleraceaBol002491
ORTHOMCL4813(11 genes,8 taxa):Brassica rapaBra039417
ORTHOMCL4813(11 genes,8 taxa):Brassica rapaBra040527
ORTHOMCL4813(11 genes,8 taxa):Vitis viniferaGSVIVT01031201001
ORTHOMCL4813(11 genes,8 taxa):Oryza sativaOs06t0116300-01
ORTHOMCL4813(11 genes,8 taxa):Populus trichocarpaPOPTR_0005s02070.1
ORTHOMCL4813(11 genes,8 taxa):Populus trichocarpaPOPTR_0013s01240.1
ORTHOMCL4813(11 genes,8 taxa):Sorghum bicolorSb03g002230.1
ORTHOMCL4813(11 genes,8 taxa):Carica papayaevm.TU.supercontig_48.128
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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