Basic Information
Gene Model:Bol000405
Gene Family:14-3-3 Gene Family
Chromosome:Cun
Scaffold:Scaffold000585
Sequence:
 | 
Gene Structure
Nucleotide Length:1100 bp
Transcript Length:786 bp
Protein Length:261 aa
Strand:-
Location:Scaffold000585: 10634 : 11733
Gene CDSs(4): 1-69 | 208-324 | 416-538 | 624-1100 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 11 32 NANot foundNot found
HMMSmartSM00101no description 5 249 5.9e-210IPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 2 256 1.1e-208IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 2 237 1.7e-106IPR00030814-3-3 protein
HMMPfamPF0024414-3-3 5 242 2.2e-150IPR00030814-3-3 protein
PatternScanPS007961433_1 45 55 NAIPR00030814-3-3 protein
PatternScanPS007971433_2 217 236 NAIPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 3 248 4e-179IPR00030814-3-3 protein
Gene3DG3DSA:1.20.190.20no description 3 251 4e-107IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
Q963001e-14214337_ARATH 14-3-3-like protein GF14 nu OS=Arabidopsis thaliana GN=GRF7 PE=1 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5807821e-130K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14490(5 genes,3 taxa):Brassica oleraceaBol000405
ORTHOMCL14490(5 genes,3 taxa):Brassica rapaBra040592
ORTHOMCL14490(5 genes,3 taxa):Oryza sativaOs02t0580300-01
ORTHOMCL14490(5 genes,3 taxa):Oryza sativaOs02t0580300-02
ORTHOMCL14490(5 genes,3 taxa):Oryza sativaOs02t0580300-03
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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