Basic Information
Gene Model:Bol000206
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold001134
Sequence:
 | 
Gene Structure
Nucleotide Length:2607 bp
Transcript Length:1164 bp
Protein Length:387 aa
Strand:+
Location:Scaffold001134: 1549 : 4155
Gene CDSs(7): 1-154 | 657-760 | 911-1041 | 1195-1299 | 1389-1542 | 1817-2146 | 2422-2607 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 297 313 NANot foundNot found
HMMPfamPF04564U-box 315 387 1.8e-27IPR003613U box domain
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 280 385 8.7e-33Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 280 385 8.7e-33Not foundNot found
superfamilySSF57850RING/U-box 312 387 3.3e-19Not foundNot found
HMMSmartSM00504no description 319 382 4.5e-28IPR003613U box domain
Gene3DG3DSA:3.30.40.10no description 312 386 1.2e-24Not foundNot found
Coilcoilcoiled-coil 225 263 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GXQ72e-98PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678403e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19671(3 genes,2 taxa):Brassica oleraceaBol000206
ORTHOMCL19671(3 genes,2 taxa):Brassica oleraceaBol013021
ORTHOMCL19671(3 genes,2 taxa):Brassica rapaBra010318
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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