Basic Information
Gene Model:Bol045048
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000001_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:5132 bp
Transcript Length:1446 bp
Protein Length:481 aa
Strand:-
Location:Scaffold000001_P2: 2106265 : 2111396
Gene CDSs(6): 1-690 | 1606-1733 | 1815-2029 | 2478-2571 | 4426-4659 | 5048-5132 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01490Aa_trans 27 469 4.4e-163IPR013057Amino acid transporter, transmembrane
Segsegseg 220 230 NANot foundNot found
HMMPantherPTHR22950AMINO ACID TRANSPORT 15 477 2.9e-99Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
P929340.0AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q7Y0760.0Q7Y076_BRANA Amino acid permease 6 OS=Brassica napus GN=aap6 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1157145e-11K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G10010.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G58360.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT5G49630.1
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol006986
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031230
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031231
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031232
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036772
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036773
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036774
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol044090
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol045048
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra017905
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra019969
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra027868
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031695
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031697
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra035446
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra039735
ORTHOMCL577(25 genes,7 taxa):Vitis viniferaGSVIVT01009260001
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-01
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-02
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-03
ORTHOMCL577(25 genes,7 taxa):Populus trichocarpaPOPTR_0009s08840.1
ORTHOMCL577(25 genes,7 taxa):Sorghum bicolorSb02g002440.1
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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