Basic Information
Gene Model:Bol044090
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000003_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:9303 bp
Transcript Length:1455 bp
Protein Length:484 aa
Strand:+
Location:Scaffold000003_P1: 958926 : 968228
Gene CDSs(6): 1-346 | 2527-2620 | 7603-7817 | 7971-8113 | 8569-8796 | 8875-9303 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00063ALDOKETO_REDUCTASE_3 110 125 NAIPR018170Aldo/keto reductase, conserved site
HMMPfamPF01490Aa_trans 36 471 3.2e-168IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 26 479 1.8e-111Not foundNot found
Segsegseg 228 239 NANot foundNot found
Segsegseg 455 473 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q424000.0AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q7Y0770.0Q7Y077_BRANA Amino acid permease 1 OS=Brassica napus GN=aap1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04230203e-09K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G10010.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G58360.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT5G49630.1
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol006986
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031230
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031231
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031232
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036772
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036773
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036774
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol044090
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol045048
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra017905
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra019969
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra027868
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031695
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031697
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra035446
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra039735
ORTHOMCL577(25 genes,7 taxa):Vitis viniferaGSVIVT01009260001
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-01
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-02
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-03
ORTHOMCL577(25 genes,7 taxa):Populus trichocarpaPOPTR_0009s08840.1
ORTHOMCL577(25 genes,7 taxa):Sorghum bicolorSb02g002440.1
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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