Basic Information
Gene Model:Bol043707
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1651 bp
Transcript Length:1095 bp
Protein Length:364 aa
Strand:+
Location:C09: 37316684 : 37318334
Gene CDSs(8): 1-168 | 247-318 | 392-451 | 543-620 | 693-756 | 828-1099 | 1184-1411 | 1499-1651 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 80 115 0.00063Not foundNot found
HMMPfamPF00170bZIP_1 76 108 1.4e-10IPR011616bZIP transcription factor, bZIP-1
HMMSmartSM00338no description 76 138 0.00043IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 83 98 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 99 127 NANot foundNot found
ProfileScanPS50217BZIP 78 120 8.737IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q391620.0TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q4ABR50.0Q4ABR5_BRARP 80A08_2 OS=Brassica rapa subsp. pekinensis GN=80A08_2 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G100300.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G10030.1
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G65210.2
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol008040
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol009211
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol019052
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol024636
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol043707
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra009063
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra024366
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra028604
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra031871
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra037809
ORTHOMCL1388(18 genes,8 taxa):Vitis viniferaGSVIVT01022200001
ORTHOMCL1388(18 genes,8 taxa):Oryza sativaOs04t0637000-01
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s08370.1
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s06180.1
ORTHOMCL1388(18 genes,8 taxa):Sorghum bicolorSb06g030100.1
ORTHOMCL1388(18 genes,8 taxa):Carica papayaevm.TU.supercontig_100.2
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1003031373233140252Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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