Basic Information
Gene Model:Bol041160
Gene Family:Not classified
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:4186 bp
Transcript Length:1566 bp
Protein Length:521 aa
Strand:+
Location:C05: 2750376 : 2754561
Gene CDSs(6): 1-133 | 1958-2124 | 2640-3005 | 3092-3201 | 3284-3512 | 3626-4186 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00689Cation_ATPase_C 281 500 2.1e-54IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00702Hydrolase 20 224 1.6e-15IPR005834Haloacid dehalogenase-like hydrolase
PatternScanPS00154ATPASE_E1_E2 26 32 NAIPR018303ATPase, P-type phosphorylation site
Gene3DG3DSA:1.20.1110.10no description 1 38 1.4e-06Not foundNot found
Gene3DG3DSA:1.20.1110.10no description 175 507 1.3e-85Not foundNot found
HMMTigrTIGR01494ATPase_P-type: ATPas 175 290 6.9e-29IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF91CALCIUM-TRANSPORTING 1 324 1.1e-233Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 1 324 1.1e-233IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
superfamilySSF56784HAD-like 11 243 8e-40Not foundNot found
superfamilySSF81665Calcium ATPase, tran 1 507 8.3e-63Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0008152 Biological Process metabolic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
P929390.0ECA1_ARATH Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2
TrEMBL
Best HitE_value Description
A0A0760.0A0A076_ARATH Endomembrane Ca2+ ATPase 4 OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G078100.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07670.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07810.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G10130.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT4G00900.1
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol004102
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol006517
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol007671
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol011452
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol031235
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol036766
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol041160
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra019960
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra029645
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031583
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031593
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031701
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra037404
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01009320001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025062001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025583001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01027195001
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-01
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-02
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0730800-01
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0001s23990.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s11820.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s03070.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s01500.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s09740.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g009225.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g038990.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb09g001850.1
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_114.16
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_139.2
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_142.46
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:2559958..2945863 (-)A.thalianaChr2:12006371..12536964 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:2312324..3331138 (+)B.rapaA09:1175153..1754984 (+)72
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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