Basic Information
Gene Model:Bol041027
Gene Family:ARIADNE Gene Families
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:2671 bp
Transcript Length:1506 bp
Protein Length:501 aa
Strand:+
Location:C05: 2027472 : 2030142
Gene CDSs(13): 1-236 | 323-434 | 518-608 | 706-881 | 966-1070 | 1149-1228 | 1316-1426 | 1501-1567 | 1677-1763 | 1975-2046 | 2144-2243 | 2313-2439 | 2530-2671 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 77 499 3.7e-143Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 77 499 3.7e-143Not foundNot found
Segsegseg 17 21 NANot foundNot found
superfamilySSF57850RING/U-box 96 210 6.6e-11Not foundNot found
superfamilySSF57850RING/U-box 267 326 7e-10Not foundNot found
HMMPfamPF01485IBR 189 248 3.8e-06IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 252 320 0.16IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 189 248 0.015IPR002867Zinc finger, C6HC-type
ProfileScanPS50089ZF_RING_2 119 170 9.185IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q84RQ91e-111ARI12_ARATH Probable E3 ubiquitin-protein ligase ARI12 OS=Arabidopsis thaliana GN=ARI12 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7R4B55e-96A7R4B5_VITVI Chromosome undetermined scaffold_644, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00004263001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002570009e-97K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17294(3 genes,3 taxa):Arabidopsis thalianaAT1G05880.1
ORTHOMCL17294(3 genes,3 taxa):Brassica oleraceaBol041027
ORTHOMCL17294(3 genes,3 taxa):Brassica rapaBra015460
Tandem Arrays
ClusterGene Num.Gene List
Cluster_10802Bol041027 Bol041028 
Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1460669..2471323 (-)A.thalianaChr2:12936979..13856112 (+)53
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0588017756431778553Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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