Basic Information
Gene Model:Bol040357
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000014
Sequence:
 | 
Gene Structure
Nucleotide Length:1050 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:+
Location:C04: 27844326 : 27845375
Gene CDSs(1): 1-1050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54171DNA-binding domain 191 252 6.3e-24IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 191 242 9e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 192 255 1.4e-34IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 191 252 1.9e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 192 249 22.260IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 270 293 NANot foundNot found
Segsegseg 17 29 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SVQ01e-147ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RWH43e-65B9RWH4_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019500 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G780802e-28K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12988(6 genes,5 taxa):Arabidopsis thalianaAT4G13620.1
ORTHOMCL12988(6 genes,5 taxa):Brassica oleraceaBol040357
ORTHOMCL12988(6 genes,5 taxa):Brassica rapaBra032724
ORTHOMCL12988(6 genes,5 taxa):Vitis viniferaGSVIVT01021060001
ORTHOMCL12988(6 genes,5 taxa):Populus trichocarpaPOPTR_0001s32250.1
ORTHOMCL12988(6 genes,5 taxa):Populus trichocarpaPOPTR_0017s08250.1
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:27556178..27939170 (+)A.thalianaChr4:7769770..8000222 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:27195450..28178715 (+)B.rapaA08:12360760..12980566 (-)11
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
TAT4G1362079321387933542Chr4Subgenome_III(LF)68
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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