Basic Information
Gene Model:Bol031255
Gene Family:Not classified
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:7204 bp
Transcript Length:3615 bp
Protein Length:1204 aa
Strand:-
Location:C08: 39362161 : 39369364
Gene CDSs(26): 1-162 | 280-345 | 637-698 | 1035-1116 | 1300-1410 | 1611-1688 | 1781-1877 | 2034-2140 | 2266-2331 | 2483-2604 | 2715-2790 | 2865-2942 | 3038-3154 | 3246-3395 | 3484-3588 | 4120-4262 | 4469-4570 | 4652-4715 | 4798-5176 | 5264-5343 | 5417-5620 | 5755-5976 | 6051-6218 | 6292-6654 | 6724-6830 | 6901-7204 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 654 675 NANot foundNot found
Coilcoilcoiled-coil 753 781 NANot foundNot found
superfamilySSF81660Metal cation-transpo 420 684 5.1e-28Not foundNot found
superfamilySSF81653Calcium ATPase, tran 134 285 2.4e-22Not foundNot found
superfamilySSF56784HAD-like 400 879 7.6e-35Not foundNot found
PatternScanPS00154ATPASE_E1_E2 415 421 NAIPR018303ATPase, P-type phosphorylation site
HMMPfamPF00122E1-E2_ATPase 110 313 6e-07IPR008250ATPase, P-type, ATPase-associated region
HMMPantherPTHR11939CATION-TRANSPORTING 29 964 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF18PHOSPHOLIPID-TRANSPO 29 964 0Not foundNot found
Segsegseg 1088 1098 NANot foundNot found
Segsegseg 974 983 NANot foundNot found
Segsegseg 902 914 NANot foundNot found
Segsegseg 430 441 NANot foundNot found
Segsegseg 343 364 NANot foundNot found
Segsegseg 3 23 NANot foundNot found
HMMTigrTIGR01494ATPase_P-type: ATPas 824 912 5e-30IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 346 434 2e-20IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 677 727 9.5e-20IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01652ATPase-Plipid: phosp 53 1119 0IPR006539ATPase, P-type, phospholipid-translocating, flippase
HMMTigrTIGR01494ATPase_P-type: ATPas 102 201 4.8e-24IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Gene3DG3DSA:3.40.50.1000no description 675 879 5.2e-20Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000287 Molecular Function magnesium ion binding
GO:0004012 Molecular Function phospholipid-translocating ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0015914 Biological Process phospholipid transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9XIE60.0ALA3_ARATH Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9S2G00.0B9S2G0_RICCO Phospholipid-transporting ATPase, putative OS=Ricinus communis GN=RCOM_0699240 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G598200.0K01530E3.6.3.1phospholipid-translocating ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G13210.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G17500.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G26130.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G54280.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G59820.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G68710.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G72700.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G25610.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G27870.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT5G04930.1
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol001303
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol003322
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol004013
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol009768
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol013357
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol015388
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol020026
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol023997
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol026323
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031255
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031426
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol034864
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol035171
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol036567
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol040422
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042735
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042929
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol043306
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol044116
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004020
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004332
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra005828
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra008042
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra009410
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra012469
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra014364
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra016040
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra017897
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra019818
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025150
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025307
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026515
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026919
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra030991
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra031711
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra035422
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01003381001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01008205001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01012005001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01013643001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01016806001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01027207001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01030172001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01032462001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01034717001
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs01t0277600-00
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326100-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0334700-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs06t0565900-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-02
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s11630.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s20440.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s34920.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0006s10970.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01500.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01520.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s11060.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s19560.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s04910.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s14270.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s25250.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0016s14500.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g022190.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036200.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036650.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb03g011170.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb07g019240.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g014640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g022370.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1.239
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_13.70
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1552.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_25.77
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_5.300
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_54.37
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_86.68
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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