Basic Information
Gene Model:Bol031232
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:4652 bp
Transcript Length:1443 bp
Protein Length:480 aa
Strand:-
Location:C08: 39490767 : 39495418
Gene CDSs(6): 1-313 | 422-515 | 721-935 | 1221-1387 | 2680-2907 | 4227-4652 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 201 207 NANot foundNot found
Segsegseg 209 226 NANot foundNot found
HMMPfamPF01490Aa_trans 28 468 2.7e-144IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 16 480 2.9e-92Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
O805920.0AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q7Y0770.0Q7Y077_BRANA Amino acid permease 1 OS=Brassica napus GN=aap1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04230201e-06K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G10010.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G58360.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT5G49630.1
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol006986
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031230
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031231
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031232
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036772
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036773
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036774
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol044090
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol045048
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra017905
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra019969
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra027868
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031695
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031697
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra035446
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra039735
ORTHOMCL577(25 genes,7 taxa):Vitis viniferaGSVIVT01009260001
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-01
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-02
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-03
ORTHOMCL577(25 genes,7 taxa):Populus trichocarpaPOPTR_0009s08840.1
ORTHOMCL577(25 genes,7 taxa):Sorghum bicolorSb02g002440.1
Tandem Arrays
ClusterGene Num.Gene List
Cluster_2903Bol031230 Bol031231 Bol031232 
Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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