Basic Information
Gene Model:Bol029244
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000067
Sequence:
 | 
Gene Structure
Nucleotide Length:887 bp
Transcript Length:603 bp
Protein Length:200 aa
Strand:+
Location:C08: 19577487 : 19578373
Gene CDSs(2): 1-80 | 365-887 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 5 56 5.5e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 166 188 NANot foundNot found
Segsegseg 79 94 NANot foundNot found
Segsegseg 37 50 NANot foundNot found
superfamilySSF54171DNA-binding domain 5 66 6.5e-23IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 6 69 4.3e-40IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 6 63 22.155IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 5 66 6.2e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9XI339e-85WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1
TrEMBL
Best HitE_value Description
A1X3G85e-88A1X3G8_BRAJU AP2 transcription factor OS=Brassica juncea GN=SHN1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_10345303e-20K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3457(12 genes,8 taxa):Arabidopsis thalianaAT1G15360.1
ORTHOMCL3457(12 genes,8 taxa):Brassica oleraceaBol029244
ORTHOMCL3457(12 genes,8 taxa):Brassica oleraceaBol038133
ORTHOMCL3457(12 genes,8 taxa):Brassica rapaBra016663
ORTHOMCL3457(12 genes,8 taxa):Brassica rapaBra026140
ORTHOMCL3457(12 genes,8 taxa):Vitis viniferaGSVIVT01015540001
ORTHOMCL3457(12 genes,8 taxa):Vitis viniferaGSVIVT01017315001
ORTHOMCL3457(12 genes,8 taxa):Oryza sativaOs02t0202000-00
ORTHOMCL3457(12 genes,8 taxa):Populus trichocarpaPOPTR_0006s06870.1
ORTHOMCL3457(12 genes,8 taxa):Populus trichocarpaPOPTR_0018s13130.1
ORTHOMCL3457(12 genes,8 taxa):Sorghum bicolorSb04g006970.1
ORTHOMCL3457(12 genes,8 taxa):Carica papayaevm.TU.supercontig_10.232
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:19125098..19773949 (+)A.thalianaChr1:4739873..5598447 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:18355656..19966134 (+)B.rapaA09:2440918..3966665 (-)86
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1536052835385284673Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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