Basic Information
Gene Model:Bol028637
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000070
Sequence:
 | 
Gene Structure
Nucleotide Length:1032 bp
Transcript Length:1032 bp
Protein Length:343 aa
Strand:+
Location:C02: 12814109 : 12815140
Gene CDSs(1): 1-1032 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 9 24 NANot foundNot found
ProfileScanPS51032AP2_ERF 65 120 19.968IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 183 286 15.058IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 176 298 1.8e-39Not foundNot found
Gene3DG3DSA:3.30.730.10no description 64 123 8.7e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 65 126 9.2e-28IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 64 123 3.2e-19IPR016177DNA-binding, integrase-type
HMMPfamPF02362B3 182 288 7.6e-36IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 64 113 2.2e-13IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
P822801e-146RAV2_ARATH AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HWL71e-113B9HWL7_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G688401e-146K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17751(3 genes,3 taxa):Arabidopsis thalianaAT1G68840.1
ORTHOMCL17751(3 genes,3 taxa):Brassica oleraceaBol028637
ORTHOMCL17751(3 genes,3 taxa):Brassica rapaBra038346
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:12127295..13913455 (+)A.thalianaChr1:25684314..26226652 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12835805 (+)B.rapaA07:4956496..5424555 (-)14
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G688402588032725881736Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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