Basic Information
Gene Model:Bol024636
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:5084 bp
Transcript Length:1089 bp
Protein Length:362 aa
Strand:-
Location:C02: 2696208 : 2701291
Gene CDSs(7): 1-153 | 230-457 | 681-952 | 4413-4554 | 4632-4691 | 4780-4851 | 4923-5084 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 104 125 NANot foundNot found
ProfileScanPS50217BZIP 76 118 8.760IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 81 96 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 78 106 5.7e-05Not foundNot found
HMMPfamPF00170bZIP_1 74 106 5.7e-11IPR011616bZIP transcription factor, bZIP-1
HMMSmartSM00338no description 74 132 4.7e-05IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q391620.0TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q24JJ30.0Q24JJ3_ARATH At5g10030 OS=Arabidopsis thaliana GN=At5g10030 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G10030.1
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G65210.2
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol008040
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol009211
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol019052
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol024636
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol043707
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra009063
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra024366
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra028604
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra031871
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra037809
ORTHOMCL1388(18 genes,8 taxa):Vitis viniferaGSVIVT01022200001
ORTHOMCL1388(18 genes,8 taxa):Oryza sativaOs04t0637000-01
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s08370.1
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s06180.1
ORTHOMCL1388(18 genes,8 taxa):Sorghum bicolorSb06g030100.1
ORTHOMCL1388(18 genes,8 taxa):Carica papayaevm.TU.supercontig_100.2
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2634085..3252702 (+)B.rapaA10:1680634..2370845 (-)54
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1003031373233140252Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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